TM4 microarray software suite

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Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, Howe EA, et al. TM4 microarray software suite. Methods in Enzymology. 2006;411:134-93. Abstract

Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, et al. TM4: a free, open-source system for microarray data management and analysis. Vol 34.; 2003.

Publication Type:

Journal Article

Authors:

Saeed,Alexander I; Bhagabati,Nirmal K; Braisted,John C; Liang,Wei; Sharov,Vasily; Howe,Eleanor A; Li,Jianwei; Thiagarajan,Mathangi; White,Joseph A; Quackenbush,John

Source:

Methods in Enzymology, Volume 411, p.134 - 193 (2006)

ISBN:

0076-6879

URL:

http://www.ncbi.nlm.nih.gov/pubmed/16939790

Keywords:

MeV, TM4

Abstract:

Powerful specialized software is essential for managing, quantifying, and ultimately deriving scientific insight from results of a microarray experiment. We have developed a suite of software applications, known as TM4, to support such gene expression studies. The suite consists of open-source tools for data management and reporting, image analysis, normalization and pipeline control, and data mining and visualization. An integrated MIAME-compliant MySQL database is included. This chapter describes each component of the suite and includes a sample analysis walk-through.